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  • Extract Repeat Unit - HTML

    https://labs.utsouthwestern.edu/sites/default/files/2022-04/extract-repeat-unit.pdf

    #!/usr/bin/perl   open  (FILE,  "Input.fastq")  ||  die  "can't:  $!";     open  (OUTPUT1,">Output.fastq")  ||  die  "can't:  $!";   while()   {   $line  =  $_;   chomp($line);                  if($line=~/^@DJDP.*/)         …

  • Exploiting metabolic acidosis in solid cancers using a tumor-agnostic pH-activatable nanoprobe for fluorescence-guided surgery

    https://labs.utsouthwestern.edu/sites/default/files/2022-08/127_Voskuil_NComm_ClinicalTrial.pdf

    ARTICLE Exploiting metabolic acidosis in solid cancers using a tumor-agnostic pH-activatable nanoprobe for fluorescence-guided surgery F. J. Voskuil 1,13, P. J. Steinkamp 2,13, T. Zhao3, B. van der Vegt 4, M. Koller2, J. J. Doff4, Y. Jayalakshmi3, J. P. Hartung5, J. Gao 6,7, B. D. Sumer 6✉, M. J. H…

  • Extract Real Alignment - HTML

    https://labs.utsouthwestern.edu/sites/default/files/2022-04/extract-real-alignment.pdf

    #!/usr/bin/perl   open(FILE,  "accepted_hits_sorted.sam")  or  die("Unable  to  open  file");   open(OUTPUT,  ">final-­‐alignment.sam")  or  die("Unable  to  open  file");     use  strict;   my  $i;   my  $line;   my  $line1;   my  @group;   my  …

  • Single Cell Transcriptomics – a simple walkthrough

    https://labs.utsouthwestern.edu/sites/default/files/2022-08/McDermott_Center_Bioinformatics_Lab_Single_Cell_RNASeq_Analysis.pdf

    Single Cell Transcriptomics – a simple walkthrough Adwait Sathe, PhD McDermott Center Bioinformatics Lab adwait.sathe@utsouthwestern.edu MCDERMOTT CENTER BIOINFORMATICS LAB 1 mailto:Adwait.sathe@utsouthwestern.edu RNASeq RNASeq 2 MCDERMOTT CENTER BIOINFORMATICS LAB https://www.10xgenomics.c…

  • A transistor-like pH nanoprobe for tumour detection and image-guided surgery

    https://labs.utsouthwestern.edu/sites/default/files/2022-08/115_Zhao_NatBME.pdf

    NATURE BIOMEDICAL ENGINEERING 1, 0006 (2016) | DOI: 10.1038/s41551-016-0006 | www.nature.com/natbiomedeng 1 ARTICLES PUBLISHED: 19 DECEMBER 2016 | VOLUME: 1 | ARTICLE NUMBER: 0006 A transistor-like pH nanoprobe for tumour detection and image-guided surgery Tian Zhao1​†, Gang Huang1, Yang Li1, Shu…

  • Prolonged activation of innate immune pathways by a polyvalent STING agonist

    https://labs.utsouthwestern.edu/sites/default/files/2022-08/132_Li_NBME_2021_0.pdf

    Articles https://doi.org/10.1038/s41551-020-00675-9 1Department of Pharmacology, Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX, USA. 2Department of Pathology, Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern…

  • Polycarbonate-based ultra-pH sensitive nanoparticles improve therapeutic window

    https://labs.utsouthwestern.edu/sites/default/files/2022-08/130_Wang_Ncomm_2020.pdf

    ARTICLE Polycarbonate-based ultra-pH sensitive nanoparticles improve therapeutic window Xu Wang 1, Jonathan Wilhelm 1, Wei Li1, Suxin Li1, Zhaohui Wang1, Gang Huang1, Jian Wang1, Houliang Tang1, Sina Khorsandi 2, Zhichen Sun 1, Bret Evers 3 & Jinming Gao 1✉ Stimuli-sensitive nanomaterials with coo…

  • Molecular basis of cooperativity in pH-triggered supramolecular self-assembly

    https://labs.utsouthwestern.edu/sites/default/files/2022-08/114_Li_natcomm.pdf

    ARTICLE Received 23 May 2016 | Accepted 13 Sep 2016 | Published 27 Oct 2016 Molecular basis of cooperativity in pH-triggered supramolecular self-assembly Yang Li1, Tian Zhao1, Chensu Wang1,2, Zhiqiang Lin1, Gang Huang1, Baran D. Sumer3 & Jinming Gao1 Supramolecular self-assembly offers a powerful …

  • 126_Huang_AdvHealthMat_0.pdf

    https://labs.utsouthwestern.edu/sites/default/files/2022-08/126_Huang_AdvHealthMat_0.pdf

    COMMUNICATION www.advhealthmat.de Tumor-Targeted Inhibition of Monocarboxylate Transporter  Improves T-Cell Immunotherapy of Solid Tumors Tongyi Huang, Qiang Feng, Zhaohui Wang, Wei Li, Zhichen Sun, Jonathan Wilhelm, Gang Huang, Tram Vo, Baran D. Sumer, and Jinming …

  • ind-162493-amendment-2-advertisement-flyer-08-22-2023.pdf

    https://labs.utsouthwestern.edu/sites/default/files/2023-09/ind-162493-amendment-2-advertisement-flyer-08-22-2023.pdf

    \ PEGSITACIANINE FOR THE SURGICAL DETECTION OF HEAD AND NECK CANCER PURPOSE INCLUSION DESIGN To investigate whether Pegsitacianine a fluorescent nanoparticle can image head and neck cancer and unknown primary head and neck cancer during surgery or biopsy. 1. Adul…