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Pranavkumar Shivakumar, Ph.D.

Pranavkumar Shivakumar, Ph.D.

Titles and Appointments

Associate Professor

Schools
Medical School
Departments
Pediatrics
  • Biography

    Dr. Pranav Shivakumar, Ph.D., is an Associate Professor in the Department of Pediatrics at UT Southwestern Medical Center and Director of the Biliary Atresia Research and Cure Center in the Division of Pediatric Gastroenterology, Hepatology, and Nutrition. He earned his diploma and bachelor’s degree in pharmaceutical sciences from Karnataka University, Dharwad, India, and his master’s and Ph.D. in technology from the University Institute of Chemical Technology, University of Mumbai, India, where he earned junior and senior scholarships from the government of India. Dr. Shivakumar completed his post-doctoral fellowship and training in pediatric hepatology with a specific focus on biliary atresia at Cincinnati Children’s Hospital Medical Center. He then joined the Division of Gastroenterology, Hepatology, and Nutrition, and the Department of Pediatrics at the University of Cincinnati College of Medicine and established research programs to investigate mechanisms of biliary atresia pathogenesis. 

    Dr. Shivakumar’s research focuses on understanding how innate and adaptive immune systems independently, and in concert, orchestrate to induce bile duct epithelial injury, inflammation, and atresia (complete absence of duct lumen). The goal of his research is to better understand the mechanisms of biliary disease and develop novel therapeutics to promote long-term native liver survival in infants with biliary atresia. To understand the early processes of epithelial injury, duct inflammation, and blockade, his laboratory has developed neonatal mouse models of biliary atresia and liver fibrosis induced by virus and toxins as well as organoids from mouse and patient liver tissue. 

    Dr. Shivakumar is dedicated to promoting scientific training and education. He has mentored a large number of post-doctoral and clinical fellows, research personnel, and undergraduate and medical students who have successfully established their careers in medicine and other fields. Dr. Shivamkumar continues to work with medical students and gastrointestinal and hepatology fellows to further biliary atresia research and education.

  • Research Interest
    • Biliary atresia
    • Cholangiopathies
    • Complement biology
    • Inflammation in the liver: Innate and adaptive immunology
    • Neonatal Cholestasis
    • Organoid technology
    • Toxins in bile duct epithelial injury
  • Publications
    Cellular crosstalk mediated by TGF-β drives epithelial-mesenchymal transition in patient-derived multi-compartment biliary organoids
    Ayabe H, DePasquale EA, Amarachintha SP, Mourya R, Li W, Nalluri S, Fox SR, Konishi K, Shivakumar P, Bezerra JA Nature communications 2025 Dec 16
    Utility of Serum Matrix Metalloproteinase-7 as a Biomarker in Cholestatic Infants with Congenital Heart Disease
    Pandurangi S, Kim ME, Noriega N, Conant B, Seo JD, Mourya R, Shivakumar P, Peters AL, Misfeldt A, Chlebowski M Pediatric Cardiology 2025 Dec 46 2469-2474
    Advances in prognostic biomarkers for biliary atresia: Current insights and future directions
    Anouti A, Sudhakara P, Pratt C, Mourya R, VanWagner L, Shivakumar P, Pandurangi S Journal of pediatric gastroenterology and nutrition 2025 Sep 81 497-506
    Plasticity between type 2 innate lymphoid cell subsets and amphiregulin expression regulates epithelial repair in biliary atresia
    Russi AE, Shivakumar P, Luo Z, Bezerra JA Hepatology 2023 Oct 78 1035-1049
    Editorial: Infants with cholestasis
    Uchida H, Tiao GM, Shivakumar P, Wong KK, Asai A, Amano H Frontiers in Pediatrics 2023 Apr 11
    HIF-1alpha-pathway activation in cholangiocytes of patients with biliary atresia: An immunohistochemical/molecular exploratory study
    Quelhas P, Breton MC, Oliveira RC, Cipriano MA, Teixeira P, Cerski CT, Shivakumar P, Vieira SM, Kieling CO, Verde I, Santos JL Journal of Pediatric Surgery 2023 Mar 58 587-594
    Maternal regulation of biliary disease in neonates via gut microbial metabolites
    Jee JJ, Yang L, Shivakumar P, Xu Pp, Mourya R, Thanekar U, Yu P, Zhu Y, Pan Y, Wang H, Duan X, Ye Y, Wang B, Jin Z, Liu Y, Cao Z, Watanabe-Chailland M, Romick-Rosendale LE, Wagner M, Fei L, Luo Z, Ollberding NJ, Tang St, Bezerra JA Nature communications 2022 Dec 13
    Serum Proteomics Uncovers Biomarkers of Clinical Portal Hypertension in Children With Biliary Atresia
    Osborn J, Mourya R, Thanekar U, Su W, Fei L, Shivakumar P, Bezerra JA Hepatology Communications 2022 May 6 995-1004
    Biliary organoids uncover delayed epithelial development and barrier function in biliary atresia
    Amarachintha SP, Mourya R, Ayabe H, Yang L, Luo Z, Li X, Thanekar U, Shivakumar P, Bezerra JA Hepatology 2022 Jan 75 89-103
    “Complimenting the Complement”: Mechanistic Insights and Opportunities for Therapeutics in Hepatocellular Carcinoma
    Malik A, Thanekar U, Amarachintha S, Mourya R, Nalluri S, Bondoc A, Shivakumar P Frontiers in Oncology 2021 Feb 10
  • Honors & Awards
    • Associate Editor, Frontiers in Pediatrics: Gastroenterology and Hepatology
      (2023)
    • Fellow, The Royal Society of Medicine
      (2022)
    • Associate Editor, Frontiers in Immunology
      (2021)
    • Elected Fellow, American Association for the Study of Liver Diseases
      (2020)
    • Elected Member, Society for Pediatric Research
      (2014)
    • Elected Member, Sigma Xi, The Scientific Research Society
      (2009)
    • FASEB Award, Snowmass Village, CO
      (2009)
    • Key Resource Person, Symposium on Drug Design and Discovery, India
      (2008)
    • Invited Speaker, University of Cincinnati College of Medicine, Cincinnati, OH
      (2007)
    • Invited Speaker, International Symposium on Drug Discovery and Process Research
      (2006)
    • Travel Award, NIH-NIDDK, Bethesda, MD
      (2006)
    • Best Poster Award, DDRDC Scientific Retreat and External Advisory Board Meeting
      (2005)
    • Travel Award, American Association for the Study of Liver Diseases, Boston, MA
      (2004)
    • Travel Award, Mead Johnson Nutritionals
      (2004)
    • Travel Award, American Association for the Study of Liver Diseases, Boston, MA
      (2003)
    • Travel Award, Pediatric Academic Society, Seattle, WA
      (2003)
    • Govt. of India UGC Senior Research Fellowship Award
      (1998)
    • Academic Achievement Award, Indian Drug Manufacturers' Association
      (1996)
    • Gold Medal, Bachelor's in Pharmacy, KLE University, Belgaum,India
      (1995)
    • Govt. of India UGC Junior Research Fellowship Award
      (1995)
    • Gold Medal, Diplomate in Pharmacy, KLE University, Belgaum, India
      (1990)
  • Professional Associations/Affiliations
    • American Association for the Study of Liver Diseases (2004)
    • American Association of Pharmaceutical Scientists (2010)
    • American Chemical Society (2014)
    • American Gastroenterological Association (2012)
    • American Society for Microbiology (2014)
    • Indian Pharmaceutical Association (2002)
    • International Complement Society (2008)
    • North American Society of Pediatric Gastroenterology, Hepatology and Nutrition (2012)
    • Sigma Xi (2022)
    • Society for Pediatric Research (2012)