PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Pei J, Grishin NV. Bioinformatics January 2007 23(7) 802-808
Protein structure prediction for the male-specific region of the human Y chromosome.
Ginalski K, Rychlewski L, Baker D, Grishin NV. Proc Natl Acad Sci U S A February 2004 101(8) 2305-2310
COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance.
Sadreyev R, Grishin NV J Mol Biol February 2003 326(1) 317-336
Sequence and structure classification of kinases.
Cheek S, Zhang H, Grishin NV. J Mol Biol July 2002 320(4) 855-881
Fold change in evolution of protein structures.
Grishin, N.V. J. Struct. Biol. 2001 134 167-185
A comprehensive system for evaluation of remote sequence similarity detection
Qi Y, Sadreyev RI, Wang Y, Kim BH, Grishin NV. BMC Bioinformatics August 2007 8(1) 314
Searching for three-dimensional secondary structural patterns in proteins with ProSMoS.
Shi S, Zhong Y, Majumdar I, Sri Krishna S, Grishin NV. Bioinformatics June 2007 23(11) 1331-1338
COMPASS server for remote homology inference
Sadreyev RI, Tang M, Kim BH, Grishin NV. Nucleic Acids Res May 2007 35(Web Server issue) W653
MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information.
Pei J, Grishin NV. Nucleic Acids Res August 2006 34(16) 4364-4374
Structural classification of small, disulfide-rich protein domains.
Cheek S, Krishna SS, Grishin NV. J Mol Biol. May 2006 359(1) 215-237